Search

  • Select Article Type
  • Abstract Supplements
  • Blood Group Review
  • Call to Arms
  • Hypothesis
  • In Memoriam
  • Interview
  • Introduction
  • Short Report
  • abstract
  • Abstracts
  • Article
  • book-review
  • case-report
  • case-study
  • Clinical Practice
  • Commentary
  • Conference Presentation
  • conference-report
  • congress-report
  • Correction
  • Editorial
  • Editorial Comment
  • Erratum
  • Events
  • Letter
  • Letter to Editor
  • mini-review
  • minireview
  • News
  • non-scientific
  • Obituary
  • original-paper
  • Original Research
  • Pictorial Review
  • Position Paper
  • Practice Report
  • Preface
  • Preliminary report
  • Product Review
  • rapid-communication
  • Report
  • research-article
  • Research Communicate
  • research-paper
  • Research Report
  • Review
  • review -article
  • review-article
  • Review Paper
  • Sampling Methods
  • Scientific Commentary
  • short-communication
  • short-report
  • Student Essay
  • Varia
  • Welome
  • Select Journal
  • Polish Journal Of Microbiology
  • Journal Of Nematology

 

Article

Draft Transcriptome of Globodera ellingtonae

Globodera ellingtonae is a newly described cyst nematode found in Idaho, Oregon, and Argentina. Here we present the first transcriptome assembly of G. ellingtonae, providing a valuable resource for comparing the evolution of expressed genes between potato cyst nematode species.

WENDY S. PHILLIPS, SEBASTIAN EVES-VAN DEN AKKER, INGA A. ZASADA

Journal of Nematology , ISSUE 2, 129–130

Article

Introduction to Nematode Genome and Transcriptome Announcements in the Journal of Nematology

The Journal of Nematology now offers publication of Nematode Genome Announcements (NGA) and Nematode Transcriptome Announcements (NTA). These brief reports announce the sequencing and assembly of a nematode genome or transcriptome resource, along with basic technical information on DNA sequencing and bioinformatic methods used. This publishing initiative offers a new avenue to openly and concisely communicate the availability and relevance of genome and transcriptome sequence resources to the

DEE R. DENVER, ERIK J. RAGSDALE, W. KELLEY THOMAS, INGA A. ZASADA

Journal of Nematology , ISSUE 2, 125–126

Short Communication

Global Transcriptome Changes of Biofilm-Forming Staphylococcus epidermidis Responding to Total Alkaloids of Sophorea alopecuroides

Transcriptome changes of biofilm-forming Staphylococcus epidermidis response to total alkaloids of Sophorea alopecuroides was observed. Bioinformatic analyses were further used to compare the differential gene expression between control and the treated samples. It was found that 282 genes were differentially expressed, with 92 up-regulated and 190 down-regulated. These involved down-regulation of the sulfur metabolism pathway. It was suggested that inhibitory effects on Staphylococcus

CUI-PING GUAN, HUI-XIA LUO, H.E. FANG, XUE-ZHANG ZHOU

Polish Journal of Microbiology , ISSUE 2, 223–226

research-article

De novo transcriptome sequencing and analysis of Anisakis pegreffii (Nematoda: Anisakidae) third-stage and fourth stage larvae

functional annotation The complete sequences of two sample sets were subjected to the adaptor and quality trimming by FastQC method. The contigs were obtained by the assembly of preprocessed sequences assembly using Trinity (Haas et al., 2013). Then, they were clustered using the CD-HIT and TGIGL, to obtain the unique genes as a reference transcriptome (Pertea et al., 2003; Li and Godzik, 2006). The preprocessed reads were further mapped to the reference transcriptome using BWA and the expression

U-Hwa Nam, Jong-Oh Kim, Jeong-Ho Kim

Journal of Nematology , 1–16

Original Paper

Functional and Transcriptomic Characterization of a Dye-decolorizing Fungus from Taxus Rhizosphere

biotransformation. Transcriptome changes of M. verrucaria elicited by azo dye and phenolic were quantified by the high throughput transcriptome sequencing, and the activities of the selected oxidases and reductases were determined. The possible involvement of oxidases and reductases, especially laccase, aryl alcohol oxidase, and ferric reductase in the biotransformation of dye and phenolic compounds was revealed at both transcriptomic and phenotypic levels. Revealing the transcriptomic mechanisms of fungi in

DA CHENG HAO, SI MENG SONG, YAN CHENG, ZHI QIANG QIN, GUANG BO GE, BAI LIN AN, PEI GEN XIAO

Polish Journal of Microbiology , ISSUE 4, 417–430

research-article

Detoxification-related gene expression accompanies anhydrobiosis in the foliar nematode (Aphelenchoides fragariae)

the expression of glutaredoxin and trehalose phosphate synthase genes (Fu et al., 2012). However, it is not entirely clear what other molecular mechanisms are involved in foliar nematode desiccation. Here, we report the de novo assembly of an A. fragariae transcriptome constructed from well-hydrated and 24-hr-desiccated nematodes. The most striking result was the wholesale upregulation of multiple genes encoding Phase I and II detoxification enzymes: numerous cytochrome p450s (CYPs), short chain

Zhen Fu, Paula Agudelo, Christina E. Wells

Journal of Nematology , 1–12

Research Article

Five life stage-specific transcriptome assemblies for the reniform nematode, Rotylenchulus reniformis Linford & Oliveira

The reniform nematode (Rotylenchulus reniformis Linford and Oliveira) is a semi-endoparasitic nematode that is a pathogen of numerous major crops such as cotton and soybean. Here, the authors present transcriptome assemblies of the egg, second-stage juvenile (J2), J3, vermiform adult, and sedentary female life stages of this important plant pathogen.

Kurt C. Showmaker, William S. Sanders, Sebastian Eves-van den Akker, Brigitte E. Martin, Franklin E. Callahan, Daniel G. Peterson, Martin J. Wubben

Journal of Nematology , ISSUE 4, 1–2

research-article

Two new Species of Pristionchus (Nematoda: Diplogastridae) include the Gonochoristic Sister Species of P. fissidentatus

sister group to all described beetle-associated Pristionchus species. Thus, the gonochorist P. paulseni sp. n. has a crucial position in the phylogeny of Pristionchus. In order to characterize both species, morphology, morphometrics, mating experiments and genome-wide transcriptome sequencing are used. Materials and methods Nematode cultivation One strain of P. paulseni sp. n. was isolated from an adult of Lucanus dybowski taiwanus (Miwa, 1937) (Coleoptera: Lucanidae) collected at Pilu sacred tree

Matthias Herrmann, Natsumi Kanzaki, Christian Weiler, Kohta Yoshida, Christian RÖdelsperger, Ralf J. Sommer

Journal of Nematology , 1–14

original-paper

Impact of Hydrogen on the Transcriptome of Sinorhizobium meliloti 1021 Using RNA-sequencing Technology

, which in turn provides nutrients to the resident bacteria (Spaink 2000). This study aimed to provide a new understanding of the role of hydrogen in the plant-rhizobacterium interaction and gain a better understanding of metabolic processes underlying these relationships using S. meliloti 1021 as a model bacterium. To this end, we conducted transcriptome analysis of S. meliloti 1021 using RNA-sequencing (RNA-Seq) technology to identify differentially expressed genes in the presence and absence of

RUIRUI LIU, LULU LI, ZHIYING LI, WEIWEI WANG

Polish Journal of Microbiology , ISSUE 1, 39–48

Article

Assessment of Globodera pallida RNA Extracted from Solanum Roots

The introduction of high-throughput sequencing technologies has made transcriptome analyses of plant–pathogen interactions almost routine. Nevertheless, it is still challenging to obtain RNA from populations made up of two species. An RNA extraction method that worked well on free-living Caenorhabditis elegans failed when applied to isolated Globodera pallida J2 larva. Furthermore, alternative protocols that extracted RNA from free-living J2 larva produced less satisfactory

N. CAROL CASAVANT, JOSEPH C. KUHL, FANGMING XIAO, ALLAN B. CAPLAN, LOUISE-MARIE DANDURAND

Journal of Nematology , ISSUE 1, 12–20

No Record Found..
Page Actions